Scaffold Ga0114908_1012593

Overview

Basic Information

• Taxon OID: 3300009418
• Scaffold ID: Ga0114908_1012593
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3457
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075340	Metagenome	119	Y
F083247	Metagenome	113	Y
F099856	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114908_10125932	F099856	N/A	MKRRRPPIKPFEYGKYIIEYRDAASGLLRFHKERIDNKGDAKKIRDKLLSEGVDKPVIKRVG*
Ga0114908_10125936	F075340	N/A	MNGKIGEYTFELDNALSRIDVYQTGEGSEPSWYISVGRDIDEKTFHYEIMDWYSKKVEN*
Ga0114908_10125937	F083247	N/A	LKIKKELRYNNSMTVDLTKSDKEYAKQHGLTFGEMRDFKEDMIREEEMMKTFYETKEKERIDFQNSPQSIYAAW*