NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114909_1171603

Scaffold Ga0114909_1171603


Overview

Basic Information
Taxon OID3300009414 Open in IMG/M
Scaffold IDGa0114909_1171603 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)564
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003515Metagenome / Metatranscriptome482Y
F003706Metagenome473N

Sequences

Protein IDFamilyRBSSequence
Ga0114909_11716031F003706GGAMSEVSDVELGKLIQQISTLELMVKEQNIRLDKLDQQLERTRGIGIGIVLATVGLSGVGASLFTRWLG
Ga0114909_11716032F003515N/AVYLFIGLAMVTSAFAGPPKGMVKQMIPFPAMCLPATVAENHFAVLMGALITDYGVHISMTFSASLDNSRRIAIIENPDTGLAGVLMITDEQTCIAFSGEDRKEFIRPPDHPMGAMNMDTET*

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