NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114909_1119264

Scaffold Ga0114909_1119264


Overview

Basic Information
Taxon OID3300009414 Open in IMG/M
Scaffold IDGa0114909_1119264 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)712
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002744Metagenome / Metatranscriptome533Y
F043153Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0114909_11192641F043153AGGTGGMPHTTGEILPSRVKAVITYGIDNYGEDLFLPFTDVGLTETALTYSGVAMTRDLENSNQPMDVFPA
Ga0114909_11192642F002744N/ALNFYGQPLVANTVAPICGATVIYDTDGTNGAESYYTRPTNETAAATAVDTRTEGGSMTIQGGNEITGLYTVVSGGTATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSNANAVTGGGGLMQYNMPRGKGIPLANNVTIKNNTRTEMLAQVQAISLTL*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.