Scaffold Ga0114909_1043668

Overview

Basic Information

• Taxon OID: 3300009414
• Scaffold ID: Ga0114909_1043668
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1349
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009812	Metagenome	312	Y
F015532	Metagenome / Metatranscriptome	254	Y
F023621	Metagenome	209	Y
F056897	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114909_10436682	F023621	AGGAG	MSIMDRRINNVLKAMREAKPYDMKMIWNKKLQELFRIRGEKAFERLEHQARMVH*
Ga0114909_10436683	F015532	GAGG	VNLIKENIKVRQEIPNRMMAATFTLPIDGRRVVGILNYVASDSGLTPMAFWVKLKPTDSYLDRELRASGKLISRCL*
Ga0114909_10436684	F056897	GAG	LKDLVETLSQDNVLGQMANYLHKNMEDIILGRQLDKKQRELSTDPYAMKE*
Ga0114909_10436686	F009812	GAGG	MDEFEIEWIPEDTGAPYEAVDPLIDIPAHTIDKLCKKKFGHTNWARMGQMSPEDLVGNPHEFDYENGVIYFENAHMV*