NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114909_1021660

Scaffold Ga0114909_1021660


Overview

Basic Information
Taxon OID3300009414 Open in IMG/M
Scaffold IDGa0114909_1021660 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2095
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002150Metagenome589Y
F025299Metagenome / Metatranscriptome202N
F030781Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0114909_10216601F002150N/AMMVSVAVPTMLATKAGKKSGQVLQEQFGYNFVDLITKLVLFYVISFLIAKYMEAVIYFQGGLSTVAGFFGIKLVQSDQLPNQWVSLFVDTDQKTYSATPTAQSKFNPPGWDKPYDYGTPEHQQAEPHLFPQKDQQFKFWDLINAIAIFYISWEAYKYWKKAEYLKKINLSDGVDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK*
Ga0114909_10216602F025299GGAMIVEEIPFFVEFVIIGIVLGFGYGFTKLFLNHAKDKSKVRRSERKAKEANSMEDEMDKYLNNIPAITQHLEIELMNVKEKGATPEQCKSLESKLDLARKAQQYEMPIRMLGKPILKKVLTIIDKFGV*
Ga0114909_10216604F030781N/AYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSATTRFIMGVGYTKQG*

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