Scaffold Ga0114909_1021532

Overview

Basic Information

• Taxon OID: 3300009414
• Scaffold ID: Ga0114909_1021532
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2103
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001606	Metagenome	664	N
F031891	Metagenome / Metatranscriptome	181	N
F033390	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114909_10215321	F033390	N/A	TISIDGMFNKWSGIGLGAWLYGMLPVKQLPQKGKAKTLGKSLLTGGVLGGLFSTGNPHNTNILTPSRAVTVSSSEVSYT*
Ga0114909_10215322	F001606	GAGG	MTYGYDDVTTTSLGTAVAETQLNSGTSLSAPDPAHAFLAVIPYQSESAAFTVDESLLTAFRIQSDDVAIEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTVSTNGAEQYYTRPTNETAAATAVDTRTQGGDMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSAANAITGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN*
Ga0114909_10215324	F031891	AGG	VYKMVNELIPPEIIPLVWFSCISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLIANAPRILHEIDKQIAEQTAAGVSQDQMKGLYQKK