Scaffold Ga0114909_1020630

Overview

Basic Information

• Taxon OID: 3300009414
• Scaffold ID: Ga0114909_1020630
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2161
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042083	Metagenome	159	Y
F105881	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114909_10206301	F105881	GAGG	MTDLTFAVIWLLSFFLYLAIYTWHIPLRTQKRIESWLMSEESDETLLASLGVITLKIREQALVDFEEFMLPQARDSFKNFWNGAMGNAAQELSKTEEGS
Ga0114909_10206306	F042083	N/A	RKRSTGNPRRKYMARRRMAIPHPSITGLASGLAVAQYLNRGPSTSRVGGVIQDTLKGNIEPAFNALSKNAISLATSAPGKAVLSSAIVLATAGGIARKWFPSVKLGGSKFYFKI*