Scaffold Ga0114902_1021831

Overview

Basic Information

• Taxon OID: 3300009413
• Scaffold ID: Ga0114902_1021831
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2054
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005580	Metagenome	396	Y
F010737	Metagenome	300	N
F017935	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114902_10218311	F017935	GGA	MTDATFTAIWILSFGLYLLIYTYWIPLRTQEKIESWLRSEESDETLLMSLEVITKRIREQMLIDFEEFM
Ga0114902_10218315	F010737	N/A	MSVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGAQRISRIDVAMDAPDTKGVVLACRLLGSNMSEQNLTLAGSCGDVADAGGTAQFNMVPTNFPVVGVNNIDLQVAFQFTTGTPTASSLSVTLYFE*
Ga0114902_10218316	F005580	N/A	GMASGLAIAAYLNQGRETTGRTNGFPTTTTIEGVIKDVTDGQLGTAFSTLSHNAINMIASDGGRKTLVPASGIAILGAFARKQFPNLKLGGSKLYFRI*