Scaffold Ga0114902_1018053

Overview

Basic Information

• Taxon OID: 3300009413
• Scaffold ID: Ga0114902_1018053
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2311
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015490	Metagenome	254	Y
F016735	Metagenome	245	Y
F042083	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114902_10180531	F042083	N/A	NNMARRRMAIPHPSITGMASGLAVANYLNQGTSVGAGPTLSKGVIKSTLDGNLNAAFSDLSKNAVDLATSPGGKAVLSSAIVLATAGGIARKWFPSVKLGGTKLYFKI*
Ga0114902_10180532	F015490	N/A	MTRVVRISMSCSPDHTSATDGVSVFKFAGDGVSVQQIFGGPAWSNQAAGPLDGNNGMPVVVENSAGIFDIIPGNQIDFSVSCTTAETVDVAVSITYAP*
Ga0114902_10180535	F016735	GGA	MTDEIFALVWVLSFGLYLVIYTYWIPLRTQKKIESWLISEESNETLLASLSVITNQIREQALVDFEEFMIPQGRKAAIDFWNGAMGNAAKELGKTEEGSQLSLLHSMTEELKDQPWFVQAAASKLIPVIQKAADNQGKEKVTKLVHGKFGFD*