Scaffold Ga0114902_1011440

Overview

Basic Information

• Taxon OID: 3300009413
• Scaffold ID: Ga0114902_1011440
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3059
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F029779	Metagenome	187	Y
F105326	Metagenome	100	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114902_101144010	F105336	AGGAG	MKLRQQQITRVEQILSDLERKVEEMEQQDYITYDLGKDLENILFMLDMLREEIKDE*
Ga0114902_10114403	F008925	AGGAG	MTTKSKPTINAVTLNLINKLKKIDDTINEGAWEYINIGDVIRVQDAFAEVISYYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPNAYDPSKVEEEDDE*
Ga0114902_10114404	F029779	AGGAG	MMSDKEKYEEICEALVGIDATERYTHEDILSYIYNLKDTEEKYYDNKK*
Ga0114902_10114405	F012581	AGGAG	VAKYTLYAKKVYYYRKDINAQDKKSAEKRSADYEADDNAERLFEPSGEEFYITSIEESDDE*
Ga0114902_10114406	F013187	GGAGG	MPTKKIKKKPKRNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKEMQRG*
Ga0114902_10114408	F105326	GGAG	MEQRRNLTPKEHWELHQGLWNMLGCDMQLKYKDRTTAVYVDNKEKLKYTYSTKGFIKWFPISKEDKI*