NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114903_1114236

Scaffold Ga0114903_1114236


Overview

Basic Information
Taxon OID3300009412 Open in IMG/M
Scaffold IDGa0114903_1114236 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)595
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)4.36Alt. (m)Depth (m)1304
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017655Metagenome / Metatranscriptome239Y
F051201Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0114903_11142361F051201AGAAGGMTVTEAAQTKVNQVLNGKGFLEVCLEGGGCSGYQIKLKGTSEIPPD
Ga0114903_11142362F017655GAGMTNGNNFQFNKGLSIGHVITTVGLVIAGFTFIYDLREAIAILQFKGETTEQRLERVIQRTDGQFDEIMDHLIRLESKIDELVLGGQFQIQQKGQ*

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