Scaffold Ga0114903_1052612

Overview

Basic Information

• Taxon OID: 3300009412
• Scaffold ID: Ga0114903_1052612
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 952
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 4.36
  • Depth (m): 1304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021510	Metagenome	218	Y
F045194	Metagenome	153	N
F103407	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114903_10526121	F103407	GGAGG	MTLFEKLAHMVGHRKVPVPAMPGLSVPRISFGSKATLKIIFFTVLVSLGAVGTGMYFTIRDVVHSSWNWPDSGAAYYASEDGLGTMGQQLPLNEDG
Ga0114903_10526122	F045194	GGA	MAEEDEQKPEKRDENRVQMTSQDIVRLIIAAPVIFTWLFLGSRIIISATNSEAVLNNIEPLLTVLSILTIPCVGILQSLFSNGGDKK*
Ga0114903_10526123	F021510	N/A	MGRYALIITATGVVDNVIEYDGSAPFTPPTGQELRVATDDAEPGGTWNGSAFVRAPVVEPTRTQVLMYEVTNPVASYDADGDPVNKTSDVVAAEKLELKNLLLAELQAGDLSQERTQTLLRLERE*