Scaffold Ga0114903_1027559

Overview

Basic Information

• Taxon OID: 3300009412
• Scaffold ID: Ga0114903_1027559
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1424
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 4.36
  • Depth (m): 1304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114903_10275592	F024807	N/A	MTKRMLPFNLVYHDKDQQLTLALHDNPVTLTRDEVDNLIFHLDSFLFDMDREREPQRSAEGVDHGKPQPSAEGADIHAEAHGEMLMAQFDDDPNPYHGDYSED*
Ga0114903_10275594	F020384	N/A	MHHNKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNAPPDANGDLAMVEAYKLYDRLQRLSEYPTFFVDNTRKNPGRVASDRGRPSSVRWDVAAMMASPKGGPDRNWWRPPPRPAPVKHYTREELENEYPAFTVRKERKDAT*
Ga0114903_10275595	F015347	AGGA	MLLKSAATECKEMHYDLKEDAILPDMDTIYSAAEEMRRFADRLNHFADELMIVYRKMDHHQHLIDLDDLRSESYAN*