Scaffold Ga0114903_1023478

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114903_1023478

Scaffold Ga0114903_1023478

Overview

Basic Information
Taxon OID	3300009412 Open in IMG/M
Scaffold ID	Ga0114903_1023478 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1574
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	4.36	Alt. (m)		Depth (m)	1304
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000937	Metagenome	828	Y
F099412	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114903_10234782	F000937	AGGA	MVKEIIIIVLLFNGELRLPSMPFEGTVMECFAHGDQLRMKHATYNKEQNVWYMNHGSGTWQGFICE*
Ga0114903_10234785	F099412	N/A	DSFNLYVKNLSEFFRITMDIYISGYTGVPKGCGKGPKGNGEWGRADAIKYWSEKCKIKYRDINKYFYSVDEISPYS*

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