NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114993_10466355

Scaffold Ga0114993_10466355


Overview

Basic Information
Taxon OID3300009409 Open in IMG/M
Scaffold IDGa0114993_10466355 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)942
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067107Metagenome126N
F099545Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0114993_104663551F067107GAGGMLKLLFENWRNHLSEDKQHTQVLREVTEDELGHIQRALEEMEPTDLAFNHLFGDKMRKIIDFDTVDKSTGLGKLVSLWPDGDDTFSYGDYGDNAFKWVPDFSTGTVSRLSPNDYRRKAGLEKGAIRDPFGAGLYG
Ga0114993_104663553F099545N/AMHIFSTIRYCASLYLEPDLEFEMVIVKNLTVTFVYFLLWSWIYSKMKMEAVLKKVNASLEDPNG*

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