Scaffold Ga0114993_10328329

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10328329
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1160
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F019731	Metagenome / Metatranscriptome	228	Y
F033113	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_103283292	F019731	AGGAG	MADLDNILSNIDLEEQKLETEEKDWYCGTCEHGPMMDNDTHCTRCGEKHSATHRVEEMTGWEDEDIEAEVEEIF*
Ga0114993_103283293	F000302	GGAGG	MTAQTISQDTKERIRELEGQKIMLEDRLEHLGYSGNLVKMHEIEEEIFEIDDTILKLTA*
Ga0114993_103283294	F033113	AGGAG	MNTKNQRRIVLFFQGIDGIKRHEWTHGTLYLKLEDDRDCDFIHTEIRKFYKGYINPEGGVNMYAVGDEFAFDFVPEDREAPVFTDEKEKGVWSEFAEEELLNNIDDEDESPAFPSYNEIPDEVDVMLNLEAEAKEGK*