Scaffold Ga0114993_10236690

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10236690
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1403
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_102366902	F018815	N/A	MNISLEKVTDFLKPFLLQDIVIRTDKKVLKRGKLKIFQIKQYYINLTLEFNDSIKSYEIPYPFKMHHDEGRGILNYHLSSFIPRSQINRVKFLDSSSKSKLYNNLVYILPSKESTV*
Ga0114993_102366903	F018622	GGA	MIIQKAALDSLLLDNVCEIRFARRIVKKGQAPTRRMLCTKSLSLLNSVNGKISLNYFPPKGPPKAYLGPDHLAVAWDILMQNYRNINMNQCDLIQEIPANDDFWVYFNEDIYPMSPEQKFNFMNS*
Ga0114993_102366904	F014794	N/A	MAMASIDNLAPTKSLIDLTKTGRGDFGLEDYELTFLFDDILLIEYVDLSEDGNAGGETIERNGILIPTNTLTRAWRKGRVILAGPDAKYAKEGDIVLFPNNMGVTISGVTIPEKGEVNKGIFLNEERLFGICKLKDDNTKSSS*