NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114993_10135915

Scaffold Ga0114993_10135915


Overview

Basic Information
Taxon OID3300009409 Open in IMG/M
Scaffold IDGa0114993_10135915 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1921
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F034953Metagenome / Metatranscriptome173N

Sequences

Protein IDFamilyRBSSequence
Ga0114993_101359153F002078AGGAMEMFMNQAWFQIAGEVVIFFTAITGALPDRWVQKVPILGTVWPIFNWLAGNIFNNINHPKGMAAKVEVEKEIDEAKAKVRDRIGMPDVLDGM*
Ga0114993_101359155F034953AGGMKQSQLVLLIKTYEPNTPVIITWRDAVDYSDEVTLSTLEVKEIFYDTIGFFLKVMDDYVIIAYNKADDKTYKGTGMIPCSLITDIRRLSDGYDE*

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