Scaffold Ga0114993_10134324

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10134324
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1934
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F015741	Metagenome / Metatranscriptome	252	Y
F022754	Metagenome / Metatranscriptome	213	Y
F092197	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_101343241	F092197	N/A	YTTRDIRTTMKTDINGFSDQIAAIDKRSRADGLETRTAMRNAENEVRELISDTSKRWDDKLQKVDNKLQRVDTQIEALENKLDRKITKALENPLAAMSKTK*
Ga0114993_101343244	F013820	N/A	MIDKLMPGGKTYALMGLGVLMMVCQMMGFHSFSQEAWGLLGIGGAATWKMGTDRGTTNKK
Ga0114993_101343245	F022754	N/A	MNELVITIILMIPSPSKLVNWSVNAIPTQIQLIHESGLEVSYGASPVSCKVRPNNSKEMVFRSPDNYCYFVSDLSSPIFVRHPNHWHKVNLGE*
Ga0114993_101343246	F002078	AGGAG	MDIAAMFEGQGWFAIVGQVVLVFTAITGSLPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKVRTRAGMPDVLDGM*
Ga0114993_101343247	F015741	N/A	MGCSSLPLVELIPPVFNFALGFYDHNDYYSKECLWYDEVRLNDDTKKWLLENNPPEIVSKDLAQVSRNNDLYKEVCKKDKSVVDK