Scaffold Ga0114993_10103397

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10103397
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2239
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029562	Metagenome	188	Y
F035078	Metagenome	173	Y
F035487	Metagenome	172	Y
F035967	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_101033973	F035487	GGA	MNIGDTIHFKALSSASKRTKNRIHNRGKSGFEVTKLPQRTNFVNGTSGDRDWIMLDSLDSLWSGWLAMDEIEVINESR*
Ga0114993_101033974	F035078	GGA	MKEQATKIEIFRSHLLDRIKGDRVGAIDLDPDGNPTFEVMPDLQNYSWVLDLANREGVFAIATSGSAGSRLTITEEKTNE*
Ga0114993_101033975	F029562	GGAG	MKVGDLVRVSNTAVSVGWKPEQGELGLIVSPVNLGSDARYCKVQSVKTGTALWIRDYRITPCNETEGDQ*
Ga0114993_101033977	F035967	GAGG	MKVGDLVKMKFGYSPVGVVTKVGYSVDHIVDVDPPQMASIVWTDSNKSNERVRDLKVVV*