NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114993_10100667

Scaffold Ga0114993_10100667


Overview

Basic Information
Taxon OID3300009409 Open in IMG/M
Scaffold IDGa0114993_10100667 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2273
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013357Metagenome272Y
F019113Metagenome231Y
F028360Metagenome192Y
F062279Metagenome131Y
F064629Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0114993_1010066710F019113N/ADKLNEDDGCYGLGIVVATDSTGLIGEEVRALRKEATYADQDIPGKRYDVYFNKFERTITFHGDYLEKV*
Ga0114993_101006673F028360N/AMTKKYTPQITMLKVELKNKDESILTIDMSDEFVVWFKKRHNLKRWAPRQFTKWLFGVLQEQEK*
Ga0114993_101006676F062279GAGMYERMKEFLYHCVNVVVAIILVAAIGAYVLINSVIMTRVINDLRLDTYISFDTGFGVVILILLLGWAPQQLSRSLRDRR*
Ga0114993_101006677F064629GAGGMTKLYPDTDDGVPHPQRKGLRNFTWTAAAINDWEDIWHGLWKLGYKWEWQNADRYARRYAATLNLFACHDDAVRLDMAIPLPGIVVVEEARELLLDDPGDANELDHLVGAIDRWLKTYYAP*
Ga0114993_101006678F013357GGAGMARAKYIPGALVEARNSKYGKGLGIILTGPTMDTKAATQYRDLGQEQAWFKVHWFEKPGNVNSYYMQRNNGQVDMSKNQIKLVRNR*

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