Scaffold Ga0114993_10096708

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10096708
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2324
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F029783	Metagenome	187	N
F036736	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_100967082	F036736	GGA	MISDKFHEMIIGFFILVGGFTTKRIFRNHDTLSERVSALEKIVLTKEDISGLEKDVSMIVTHLITSKGEK*
Ga0114993_100967083	F013820	AGGAG	MTPVISTIIGFIDKAIPGYKTYALMLIGALMMGCQMLGFHSFSQEAWGLLGIGGAATWKMGTDRDTTVQKK*
Ga0114993_100967085	F002078	AGGA	MDIVAMFEGQGWFAIVGQVVLIFTAVTGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDAAKAKVRDRSGMPDVLDGM*
Ga0114993_100967088	F029783	AGGAG	MIGELSGDTADFLNEIPWFDGIIYILLIMGAYVFYKWVNSKF*