Scaffold Ga0114993_10062425

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114993_10062425

Scaffold Ga0114993_10062425

Overview

Basic Information
Taxon OID	3300009409 Open in IMG/M
Scaffold ID	Ga0114993_10062425 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2961
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	177
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075331	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_100624251	F075331	N/A	IVRRGTVAVKHPSGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTFNTATRPAEWVKDSVIPRLGKIPHKHWKSAAELSTYISQVADAEVRTFGGWARKK*

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