Scaffold Ga0114993_10023428

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10023428
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5114
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039090	Metagenome	164	Y
F084097	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_100234282	F039090	GGTGG	MERIQMQDKVNIDTGEVVTQDEYIEMMLHEYEAADKLYRDAREHMNRARMVLFDYMDSEGTNGIPSETYHVRRKSSYDYTKNKAGFLPLMDILNASDLSKVYIPPTKKDGKWNAQQIKVLADIYPKVGEVLERVREAKVTLEFSRREDGK*
Ga0114993_100234285	F084097	AGGAGG	MNTPLYNQRHQITGTINDDGILLKVGLDPAKHQMKYPPGWAIDTAHLEMLTQRRGTGVELRTTDGTRLTATLKTFEVYGKEVDRGEGKQTVLPLKHWRTEDSKQMTLEL*