Scaffold Ga0114993_10010015

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10010015
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8449
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038421	Metagenome	166	N
F038425	Metagenome	166	Y
F065114	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_100100152	F065114	N/A	MNKQNLKLETPLLWGDSNAVMPSLGHGTGLLHRERETPESVSIEGLGCSGIAGAVVVPARQTMNKHLMPSPLYLSLYNPESLMSIFGVSERTEVATGSAPKVASCVKQKTQRLTDLTGDRHEKE*
Ga0114993_1001001520	F038421	N/A	MFKYCPKIERICAFCGEANWNPMKDEKTDEPVLFCGVATGYETRVAPLPECWLKMTSAMQTKYRKQKRAEYEALNPKKLDYKVIGTKRYKKSY*
Ga0114993_100100155	F038425	GGA	MDGEKSRVHCPKCDEQMWWWGYSSSYTGDGSSELGLGCENNKCDGYEVLPEDVYDAVVIEEERIDA*