Scaffold Ga0114993_10001175

Overview

Basic Information

• Taxon OID: 3300009409
• Scaffold ID: Ga0114993_10001175
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30074
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (55.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025857	Metagenome / Metatranscriptome	200	Y
F028833	Metagenome / Metatranscriptome	190	Y
F051205	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114993_1000117514	F051205	N/A	MMATWMVVGCSSTVGCFGHWVKGPPQRGTRALLKDAHLPYYQCVDENNKGSNLEKRSYL*
Ga0114993_100011755	F028833	AGCAG	LNIKNNITYIWSNAVVDNIARKVAEEPMEDIDDRAQHIIDEERGDMIREYMKEQAQREMYDDPYLNWSGLR*
Ga0114993_100011757	F025857	N/A	MTLHRIAPGCTFESEDDIALNPVIGRKRSIAVKTPKLYYRTSELDEIPDNFVERMKKFKRVEVRKEEHEVITPDGFVVSIAYNKSGYQLIPKEDLCQEQHKKRKRKSSNQN*