Scaffold Ga0118726_1011861

Overview

Basic Information

• Taxon OID: 3300009378
• Scaffold ID: Ga0118726_1011861
• Source Dataset Name: Combined Assembly of Gp0137076, Gp0137077
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5658
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014929	Metagenome / Metatranscriptome	259	Y
F020653	Metagenome	222	Y
F023792	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118726_10118613	F023792	AGG	MWISGKQLRHAWHQTKKFVRGTYHEGRKWASTIDGYAQLFRRGLSAATPMLQDLGAGEALGSGVKALQSYDTIRKQVMDVDERGREHVGRIASAIR*
Ga0118726_10118615	F020653	N/A	MADIQEIPLDIAEEVQDIVEDVAETKAEEESEPVVLEEVKPVMKPKAKGRPKGSRNLQPSKPRAKKTQIQEAPVEAPVKETYEPSSPKRNLRIPTDPTSSEVAAAMLKLLQDQSYSRQSRKQRLYNSWFH*
Ga0118726_10118616	F014929	N/A	MPKKLDTDHKYTEKLTKIRKNNVERHAGYENTLKLRQNIQRFQRNATYDMELQRLQSATVQGHIAPHAHKRIADLKNILGK*