Scaffold Ga0118722_1311320

Overview

Basic Information

• Taxon OID: 3300009376
• Scaffold ID: Ga0118722_1311320
• Source Dataset Name: Combined Assembly of Gp0137079, Gp0137080
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042376	Metagenome / Metatranscriptome	158	N
F047104	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118722_13113202	F042376	N/A	MRNLINKWFRNEVKTYEGAMLRYFYAPMIGVWLVVAIVCGFVIGFDEVWRYWRVAALNLSL*
Ga0118722_13113203	F047104	GAG	MKNQMTLKEIERYMDAKRKREAKRDTFTLNGNTYTVNNDPKHQRSQLAGYC