Scaffold Ga0118722_1247384

Overview

Basic Information

• Taxon OID: 3300009376
• Scaffold ID: Ga0118722_1247384
• Source Dataset Name: Combined Assembly of Gp0137079, Gp0137080
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1044
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F057769	Metagenome / Metatranscriptome	136	Y
F067640	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118722_12473842	F005547	AGG	MKVWVMQGSYQGELFSSVHLTQKGCALACISDLMDFHGIDDEETALAVMHNSYAFTDAEKEHQEATEPIEWDQEKLKEMTSEQLWKIFNDWCEMSWDRMSDRRYNIDASKMEIQA*
Ga0118722_12473843	F057769	GAGG	MTIEVGSIVESIGFVQGYNKSNHGLVISMMADGKIARVFWVATQQSGFCSVKDLKVIA*
Ga0118722_12473844	F067640	AGGAG	MIEVGSLLRMWGNHSTWLALDEIADTVLVVSQKTNHKMWANKASFEVIA*