NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118722_1193676

Scaffold Ga0118722_1193676


Overview

Basic Information
Taxon OID3300009376 Open in IMG/M
Scaffold IDGa0118722_1193676 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0137079, Gp0137080
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1246
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)234
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026717Metagenome197Y
F078920Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0118722_11936761F078920GGAMKNFTKELKAIIKEDPGAPIMSPDEVRSRANTMVVLTNQAPPKLLALAGPSRKAILLNYKPLMITFPDQRGVYQVKPDDIVFENHHSGRDVTEAGSEETSYEKFFASAMKKFGVDSPIDLSPEDTKKFFNYVDKNWDAEEESDGSKTEILPAIGAASAALARGALAVGSALGDENESGWEDPPRLGGEPSLITPMEGDD
Ga0118722_11936762F026717GAGMAIKTSELTKLIADQVTKDVAKKLIPKLRRVVREEIDRSMKDMIYEMVMKQQTPLQNVVEGNGAQFDTPSQPQNVSTAKSYIAQRQASRAKAQKILENKFDDDDPFADLIMDAEDPQEEVEMKQERLMNGPMKKITEVSQGDVTMPENIDFTAAMDKLGIE*
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