Scaffold Ga0118720_1030931

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118720_1030931

Scaffold Ga0118720_1030931

Overview

Basic Information
Taxon OID	3300009374 Open in IMG/M
Scaffold ID	Ga0118720_1030931 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0137041, Gp0137043
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3321
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	314
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083376	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118720_10309312	F083376	AGGAG	MIKIYNDEKADTLVESLDLGRVELGKTMKYTVFIKNTDTEWPVRNIKIENTNNELKFEAPETLEANEVKEVYVYWTPKLDSRRPLRTEFKFSGDTYIG*

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