Scaffold Ga0118720_1024689

Overview

Basic Information

• Taxon OID: 3300009374
• Scaffold ID: Ga0118720_1024689
• Source Dataset Name: Combined Assembly of Gp0137041, Gp0137043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3985
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 314

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032237	Metagenome / Metatranscriptome	180	Y
F077161	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118720_10246894	F077161	N/A	MRNLSVPEIQARFNNHQKLHRFEVDELFKDIKHKPFTEMQYRYLEIGIRHQFIYDIETSDFSPDQNFIICYHGILRDIVTGKIEHVQDSISKKDIKKAVDEHSFDFDRRLLQTLSHNMKQAHHVIGHFSTKFDNPYFRSRCLITKQYDLIPEYGYQFYGDTWRMMKTSMKAKRNTLKNFITQTTGKDEKTFVDLKYWYITHFKDHKLWQKAMDYIIDHCVKDVKMTYEGLKKAEKFNNIGRAKA*
Ga0118720_10246898	F032237	N/A	MTNENNFIDKTTSLKTVERVKFSLKNFSKGSKVEISWAFNPEDSMHIDQFLETDPDKNNILIALQGFKKLCENTLGVKILEDE*