Scaffold Ga0118716_1143171

Overview

Basic Information

• Taxon OID: 3300009370
• Scaffold ID: Ga0118716_1143171
• Source Dataset Name: Combined Assembly of Gp0127930, Gp0127931
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1193
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045695	Metagenome / Metatranscriptome	152	Y
F061900	Metagenome / Metatranscriptome	131	N
F084706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118716_11431712	F045695	N/A	MKDKRQLFLNIWNKKNSPVRDRIKSKLQCRGIDPTELNCYEYWMGYIRPWADIRGNIHHVNPFRNEAFMRSIGRNKYGTPFKMANRNKKKKRKFRK*
Ga0118716_11431713	F061900	GGAGG	MTDSSSEMSEMAGELMEAKMALGQARNQMTHMLRMGNFHLEIVPNKDIDIEKFFDKTMNNIFERFGKDAFEVKVSGMENLKPPNSGGGMHG*
Ga0118716_11431714	F084706	GGAGG	MKAPEIGTTLGKCIFDNGVIVEGQSIRSQYATLRSGRWICGECLLDILPIALEATQTHMVEEAERKEKLIAEVKKYGWSVNPETGKLEKL*