Scaffold Ga0118716_1041092

Overview

Basic Information

• Taxon OID: 3300009370
• Scaffold ID: Ga0118716_1041092
• Source Dataset Name: Combined Assembly of Gp0127930, Gp0127931
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2950
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014929	Metagenome / Metatranscriptome	259	Y
F020653	Metagenome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118716_10410925	F020653	N/A	MPEDIQEIPLDIAEEMQDIVKYIPELLPEPPVAPAVRPPEEVKPVIKPKAKGRPKGSCNKGPSKPRAKKAQIQETPVEAPVEEITYQPSSPKRNLKLPTDPSSSDVAAAMLKLLQDQSYSRQSRKQRLYNSWFQ*
Ga0118716_10410926	F014929	N/A	MPKKLDKLDHKYNEKLAKIRRGNVERHAGYENTLKLRQNIQRFQRNATYDMELQRLRGATAQGHIAPHAHKRVAELKNILAK*