NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118716_1023679

Scaffold Ga0118716_1023679


Overview

Basic Information
Taxon OID3300009370 Open in IMG/M
Scaffold IDGa0118716_1023679 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0127930, Gp0127931
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4518
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016734Metagenome / Metatranscriptome245Y
F036473Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0118716_10236794F016734N/AMNKQQREEYNAKLDKMDLSDSERDVFDHDVKRSLIDLDTYQNSDTFSLQGYNLSKVMDDIVLAQFVDLSDDGRSVVRNGIHIPLAQVQRTWRLAKVILIGPKVEECKPGDIVCFPDDKGIKVDNMSIKGYDKPLRNCIFLNEQRFFGICEELDHDNKPSKS*
Ga0118716_10236795F036473GAGMITSLANLKTILLDKVCEVKFARRNPKSGRPATRRMLCTNNIQLLNSIEGRTVLNYAPPRQAPKYNPNQENLIIVWDILMQDFRTINCDTVDLISTLEADQTFWTYLNEHIVPMSAQEKIGFMNT*

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