Scaffold Ga0118716_1008107

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118716_1008107

Scaffold Ga0118716_1008107

Overview

Basic Information
Taxon OID	3300009370 Open in IMG/M
Scaffold ID	Ga0118716_1008107 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0127930, Gp0127931
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10350
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (74.07%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F084086	Metagenome	112	Y
F097499	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118716_100810711	F084086	N/A	MRMLQRMKENRQRQIQLGSILPATEGDKVRFTYNDSPREGFIDYIWKWDSWFSGCYMTINFVDGMEDVENSSYKNFSLNQVEGFKVIASERWS*
Ga0118716_100810714	F097499	GAG	MRFNNYYPKAIANKMKKGLENELQKICEIGKVLREDGNTRIQVNYFLNVDEDFISDVLSCYKG*

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