Scaffold Ga0118673_1040927

Overview

Basic Information

• Taxon OID: 3300009362
• Scaffold ID: Ga0118673_1040927
• Source Dataset Name: Syntrophic microbial communities from biogas reactors - R1.C13.But.A IBDA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1516
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Sampling Location

• Location Name: Seattle, WA
• Coordinates
  • Lat. (^o): 47.652555
  • Long. (^o): -122.304991

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003987	Metagenome / Metatranscriptome	458	Y
F028538	Metagenome / Metatranscriptome	191	Y
F085852	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118673_10409271	F085852	AGAAGG	MSFAPKEIIVGASVPMENGSSVTLSVAGHIETERDCDDAVVIFGRKLLKYTNSASDADRLTVRQVVSSITSTPLDKVPDVGTPTPPAPVKEPAKVATPPTVAEQTAAAVAQ
Ga0118673_10409273	F003987	GGAGG	VIPSLPCGTFSDSNTPAGAFYVAAFEDGDQTHHVGEYRIETVLRALRALMACGYDDVEVGSIERGGKTHLLLIGLDGEARFGDRQMGCIAVVPVEGD*
Ga0118673_10409274	F028538	N/A	SFLLKIRTRKQRTVIPKLFFAKHGAEAFVECATIAIGKAETLLGKAALDDCCEVEVKEIGVSVEYERSEGSE*