Scaffold Ga0118673

Basic Information
Taxon OID	3300009362 Open in IMG/M
Scaffold ID	Ga0118673_1006295 Open in IMG/M
Source Dataset Name	Syntrophic microbial communities from biogas reactors - R1.C13.But.A IBDA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009362 Open in IMG/M

Scaffold ID

Ga0118673_1006295 Open in IMG/M

Source Dataset Name

Syntrophic microbial communities from biogas reactors - R1.C13.But.A IBDA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5549
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5549

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Sampling Location
Location Name	Seattle, WA
Coordinates	Lat. (^o)	47.652555	Long. (^o)	-122.304991	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Seattle, WA

Coordinates

Lat. (^o)

47.652555

Long. (^o)

-122.304991

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029451	Metagenome / Metatranscriptome	188	N
F054066	Metagenome / Metatranscriptome	140	N
F079824	Metagenome / Metatranscriptome	115	N
F101228	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118673_10062952	F079824	GGAGG	MIYGFFGSIPGCPHSRGNHALRGNGKTLCLTFVGYLDAQRGRRVISNYKTSFSEYVAVDEIARMVVEENIRDTTILITEMQVYLNSLGVNSSDLKEFIGSVVGQSRKRNTDIHYDTQRYGDIHPRLRVQTDRAFLPRKFHVDGEPCHRDRCEEEHVIYLFQHDPYLHEEVIRLNAEAFADLYNTDEIIAVPKK*
Ga0118673_10062953	F029451	N/A	VPEMAVDLEDLIASSSSKAGHPSIIEALLSTVDSIFTNNRMLQRSRLSARNIRGVVRVIGSQAFLRARLERSYKPFLDPDTGEFTYNRYDNRVLTAICEGALSGRISLDGKSREEIIRIFQAVGNTAQEESVGRGGGILGRFDY*
Ga0118673_10062954	F054066	AGG	MFRTTRKAKELNRFRVGKGSPGLKAVMYRMLNKPYLDIRIYRGYREVTRIVTPDKGMRRFVVDEVGAFVMPNEEQMLRQLHDRYALYINYNINSSAPGQVTEELEPIAFTYPPLSPAEFQTELEAQTVADLLAETEKDNSWIWLLAGGAVLIFIMILIFGGA*
Ga0118673_10062956	F101228	GAGG	MAEICEIRNMVRDIWNWVAERWAYFTVMGIVYLMIYYASGSPIQAAFGILLLICMYLGILWVDRLPRDDRLFWKRLVGITVILLAITVAITYNPVSALTITGEPAGDQIHWEITDGEPPYTVFVNGVEIVSGYPGTVFTTDSEPGRQYTAVVMDNQTVADATVTGEYYTYPLWVWLLFAALIACLIISIWLPYAAFGAAIAGGFLLLLIAPNPDYAPYLRIFAGAAFIVGLAGIAGRLQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0118673_1006295

Overview

Ecosystem & Geography

Associated Families

Sequences