NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118672_1120845

Scaffold Ga0118672_1120845


Overview

Basic Information
Taxon OID3300009360 Open in IMG/M
Scaffold IDGa0118672_1120845 Open in IMG/M
Source Dataset NameSyntrophic microbial communities from biogas reactors in Seattle, WA - R1.C12.But.B IBDA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)671
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanoculleus → unclassified Methanoculleus → Methanoculleus sp. 7T(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Sampling Location
Location NameSeattle, WA
CoordinatesLat. (o)47.652555Long. (o)-122.304991Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017851Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0118672_11208451F017851GGAGGMTPTLSRQFFETFPPDVARGFLEGDRLRIHAAKVSVVREAGTTGFAIDTLPRDGRPAEWEKTTQRICRILKGEVDRLPAETKRALAAVAHILPAGEPILLFQVETWLSMKDDGGSWWEVPAYLSLAAISLPAVVKASE

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