NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118672_1038816

Scaffold Ga0118672_1038816


Overview

Basic Information
Taxon OID3300009360 Open in IMG/M
Scaffold IDGa0118672_1038816 Open in IMG/M
Source Dataset NameSyntrophic microbial communities from biogas reactors in Seattle, WA - R1.C12.But.B IBDA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1391
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa

Source Dataset Sampling Location
Location NameSeattle, WA
CoordinatesLat. (o)47.652555Long. (o)-122.304991Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010099Metagenome / Metatranscriptome308Y
F097600Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0118672_10388161F010099N/AMTNSQTSFWSPARIGAVIGVVLLIVALAYLVSLPQNQFQPADLLEPKYAADADLGYWMVDKYDQEVDVYHLLVVMQHDNGTFEWLEGDGIWLPRRAVEGDV*
Ga0118672_10388163F097600N/AIVTQRVLPGDGSLLIRQYLPSATSANGHTLTTVRAYNAQAGGTQFAEAVFDAIGIAKTANNQITVEWTHTFADGGA*

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