Basic Information | |
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Taxon OID | 3300009360 Open in IMG/M |
Scaffold ID | Ga0118672_1015317 Open in IMG/M |
Source Dataset Name | Syntrophic microbial communities from biogas reactors in Seattle, WA - R1.C12.But.B IBDA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2555 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Wastewater Sludge → Syntrophic Microbial Communities From Biogas Reactors In Seattle, Wa |
Source Dataset Sampling Location | ||||||||
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Location Name | Seattle, WA | |||||||
Coordinates | Lat. (o) | 47.652555 | Long. (o) | -122.304991 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F080011 | Metagenome / Metatranscriptome | 115 | N |
F088943 | Metagenome / Metatranscriptome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0118672_10153174 | F088943 | AGGGGG | MRALSQSVIANEDRLVAIYRRTGDTQFTHAQIADLIPCGTMLRYTVPGIFIPARDSKGVPLKGGSRARSNVWRWHPRAAELCRQAIERDHRWENLAAGLTGGSECA* |
Ga0118672_10153175 | F080011 | AGGGGG | MTWDELEELRDRLSNILERERAEDGFCPIEEDYYILYRQAARRAVADIDPDHSRDRDRYQTLQEIYDAVEEIYDIRSAKLRMVVQDRVVFRRDGERPENLTVEEEERYDMAISLGGHNAAE* |
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