Scaffold Ga0123253_101298

Overview

Basic Information

• Taxon OID: 3300009345
• Scaffold ID: Ga0123253_101298
• Source Dataset Name: Anoxygenic and phototrophic microbial communities from Little Sippewissett salt marsh, Woods Hole, MA - SCQ2a longer assembly SCB2a_77
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1809
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Marine → Salt Marsh Microbial Communities From Little Sippewissett, Woods Hole, Ma That Are Anoxygenic And Photosynthetic

Source Dataset Sampling Location

• Location Name: Falmouth, MA
• Coordinates
  • Lat. (^o): 41.5758508
  • Long. (^o): -70.635807

Associated Families

Family	Category	Number of Sequences	3D Structure?
F086646	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0123253_1012983	F086646	AGGAG	MDFIFSIKNHYFEKGTTWVELDKIKQRCWFISVDIEDDETVPCYDTERELRISKGIAFKSVQILTIKTQETHPYWEAFLDMSYLHSTELRDVTFKDLPNESGIYMLNIWFDHDGENLNFGDNFKKLCEYRHKWDDGWVCSRCGVRKSDWLKADIKTTIR*