Scaffold Ga0103826_100245

Overview

Basic Information

• Taxon OID: 3300009338
• Scaffold ID: Ga0103826_100245
• Source Dataset Name: Microbial communities of water from the North Atlantic ocean - ACM29
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Georgia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3914
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location

• Location Name: North Pacific Ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002907	Metagenome / Metatranscriptome	521	Y
F004255	Metagenome / Metatranscriptome	446	Y
F004546	Metagenome / Metatranscriptome	433	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103826_1002451	F004255	AGGA	MELSEKAKIYKNVWSCAYQRRHMYRKTNRYYREHETILMCLNMKGAKWWEFDTEKPKYFQKYQE*
Ga0103826_10024513	F002907	N/A	MTKQNPYWFFQKWGIEEPSPLETLVEKVEQLEERIKLIEQEMVGQSNALYECWNSLDARIDILAENRTDV*
Ga0103826_1002456	F004546	GAG	MDHNEEFPFDEFPWKLVFKEGKETRKCYFQTEEHRKKHIDRYKLKKKDIKLGYKYEDE*