Scaffold Ga0116593_1132065

Overview

Basic Information

• Taxon OID: 3300009308
• Scaffold ID: Ga0116593_1132065
• Source Dataset Name: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_3 SPAdes
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Liverpool
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 556
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Source Dataset Sampling Location

• Location Name: United Kingdom
• Coordinates
  • Lat. (^o): 54.9632021
  • Long. (^o): -1.6348029

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089113	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116593_11320651	F089113	N/A	MELLVIDFSKKHFDCGGRMFILKDSLSFARYREFQKFNLEFGYSASFHDTFKGLREAWELLNNVKLAEAAVVLHNIMYGVVGLEEKDDPSLRICALFIDEEGEDPTVFDEGKMREKIECWAKELDVSPFFQLAASLVPGWINAYKNVSRSGSEETVNEEPE