Scaffold Ga0103680_10202321

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103680_10202321

Scaffold Ga0103680_10202321

Overview

Basic Information
Taxon OID	3300009285 Open in IMG/M
Scaffold ID	Ga0103680_10202321 Open in IMG/M
Source Dataset Name	Microbial communities from groundwater in Rifle, Colorado, USA - 2A_0.1um
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Lawrence Berkeley National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1058
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater → Microbial Communities From Groundwater In Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, CO, USA
Coordinates	Lat. (^o)	39.32	Long. (^o)	-107.46	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100933	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103680_102023213	F100933	AGGAGG	MEFRVSGNTLTITCQLSPGTSSKSGKTLLVASTNGFMPVEGSNLRVSLNVIKPKS*

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