Scaffold Ga0103861_10009407

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0103861_10009407

Scaffold Ga0103861_10009407

Overview

Basic Information
Taxon OID	3300009247 Open in IMG/M
Scaffold ID	Ga0103861_10009407 Open in IMG/M
Source Dataset Name	Microbial communities of water from Amazon river, Brazil - RCM14
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	University of Georgia
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1208
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location Name	Amazon river
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049019	Metagenome / Metatranscriptome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103861_100094071	F049019	AGGA	MNRQIIQRRKLQMRTSRKLTHVLFAVFTLALMSVAALAQPGNVGPVPGSAIPASSEASDMKQGALLVYNYYNSDASNVSAIDTKINITNTNVTSSTVVHFFFVSQACSVADFKTELTQSQTYSFLVSDFDPDTKGYIMAVAEAENGLPIAANYLIGDLFVKSSTGPVSANLGAIAFAALWDGTNNGNNPNAEGFWPIPGGDATTPSVNITFGGNYNSLPRTLAVDNIPSYAGGDRTLLVLLTPVQSFVTGGGAVGTLFGLLYDDAEQSQSFQISGGSCQSATVISDSFPRTAPRFTTVVPAGRTGWMKVYKTSDLGILGSAIVYNIGGRDVNFHGGHNLHHLTYSGTQTATLPVFPFELQTN*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.