NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103860_10050028

Scaffold Ga0103860_10050028


Overview

Basic Information
Taxon OID3300009243 Open in IMG/M
Scaffold IDGa0103860_10050028 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM13
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)829
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F007470Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0103860_100500281F007470N/ADGVKFAREVIIANIRKWAESSDDGQVMDDIADRLEFGTVDYDL*
Ga0103860_100500283F000450N/AMLGRLADAVIKARPRWSDPAYATRIAISQIIGDDWNMETGFGLHVNEISDNEHKIAIVDWVQQTFSLHEEDDYINTDNKVRGMKNEAIFTMDLSAFCEKYALDAMLVN*

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