Scaffold Ga0103858_10020476

Overview

Basic Information

• Taxon OID: 3300009239
• Scaffold ID: Ga0103858_10020476
• Source Dataset Name: Microbial communities of water from Amazon river, Brazil - RCM11
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Georgia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1458
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon river
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F013878	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103858_100204761	F000671	GAGG	MEKIICYSCSKQKHKLEVKKSSILPINLFMCETCINSKFEPRWVVILAGRSNGPDYVKEIIAKQR
Ga0103858_100204763	F000473	AGGA	MASDKDHFRYGINQWTGEPNKPVFYTDEMKKRIWEIPKPAMLLLDIVKYPEFLALRLYEDNFIQFDGTKKEMVIDYVSKVKKLIESYGVRCELEGVPSARVL*
Ga0103858_100204765	F013878	AGG	MLNLTELGVEVFIKKSQAASLSSFWDNYDLIIWQKDSSGYSDKKGMFLKNLWGKAERISVSDQGIWKLPKRYVRYFK*