NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0103855_10104430

Scaffold Ga0103855_10104430


Overview

Basic Information
Taxon OID3300009230 Open in IMG/M
Scaffold IDGa0103855_10104430 Open in IMG/M
Source Dataset NameMicrobial communities of water from Amazon river, Brazil - RCM8
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Georgia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)560
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location
Location NameAmazon river
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018507Metagenome / Metatranscriptome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0103855_101044301F018507N/AYASPVREEQDEVVRGRAEEVLDIVLFLGLVAFVYTACVAPPSDLQVCVLPSTARVPQEYANTNADRQLQSYFFFLQSIKAVPTEDCALAYIDFACSQAYPRCAGDSASGLGMPVNTCYFQCSNFVEKCRGQLVGVERPDCGQYSVSPDCTAVNLLIPTNGASVFTASLALIAIALVIVL*
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