Scaffold Ga0103848_1013889

Overview

Basic Information

• Taxon OID: 3300009218
• Scaffold ID: Ga0103848_1013889
• Source Dataset Name: Microbial communities of water from Amazon river, Brazil - RCM1
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Georgia
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1455
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Amazon river
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F037700	Metagenome / Metatranscriptome	167	Y
F074802	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0103848_10138893	F008943	GGAGG	MKLGEIDWFMILIIPITLLILGGTITYSEQQQRVLFQQTYNKNLECRQALKNQSEGRINNICGSVPVIGDFVK*
Ga0103848_10138895	F037700	GGA	MNKYRIKKETYGDTAWYYPQVKVLFWWFNIFECDVYFDGGFSTLERAQKRLCAHIKGTVVEYFEFNPERDCK*
Ga0103848_10138897	F074802	GGA	MNECTCSYIQIGTKTSNTKNLNPDCPLHGIGSVWYNSPEQVKKRDERSQRLRELYDAARKAREGLK*